Scaffold DelMOWin2010_c10000513

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000513
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 24234
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (84.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019646	Metagenome	228	Y
F032992	Metagenome	178	Y
F076077	Metagenome	118	N
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000051317	F019646	AGGA	MSNNFSIEYRTDCCGAYVENDADICPTCYEHCEVIEDRVDYDGSDDVHFQASLDFYGAG*
DelMOWin2010_1000051320	F076077	AGGAG	MFTEQEKMEMIIEGIRNGDVFMKDGIAVDEYGDPIFEEDADAQN*
DelMOWin2010_1000051327	F093848	GGAGG	MNEYVEDSLYDVLDRLSTKLVQLYYLNSWELDDKDGMRVSGNILYARNFYNE*
DelMOWin2010_1000051328	F032992	GAGG	MNNAMDPNFRYYDCNNIVDEITGVEQDNLSIMVAVPRIDLDTPENRQENLAAISGIVEEQYRRGVQSFTYEEYTAE*