Scaffold DelMOSpr2010_c10029116

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10029116
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2600
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F012117	Metagenome / Metatranscriptome	283	N
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100291162	F012117	GGAG	MVDILGGMSNSNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKAEGFEYHWDDKFGVVAPKPADDYKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSLLSTFWNQMDSSSANLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRTAEFVIPSWYLEQEAPVEDTFKSPNDGLSDKVAEMVKSE*
DelMOSpr2010_100291163	F006845	N/A	MDLNSYLLQEGFEEFCRHAYERVSAACNYLGIINDETYEDFKERNYASLESDYLNSIDRTIH*
DelMOSpr2010_100291165	F067646	AGAAGG	MIEWILYFIAGVFGLVAIGGLISIVAAIYILNELD*
DelMOSpr2010_100291166	F018155	AGGAG	MGQNKAAVDKRRKELKQEKLDNQIKYYYFQKGAGEHYREIQYMSGKIRRTDFND*
DelMOSpr2010_100291167	F013088	GGAG	MNETSKKALWIPEELHKDIKVFAITNNMNXESATQLLLKLGMVSYKENNHGSK*