NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10015440

Scaffold DelMOSpr2010_c10015440


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10015440 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3837
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027055Metagenome196Y
F035746Metagenome171N
F063586Metagenome129Y
F075987Metagenome118N
F083394Metagenome113N

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_1001544012F035746GAGGMKEHKHNFSKLHHVATTYYKETNCCTVVAVAVAANIGFGKAYHAMKREGRKDRRGAYFAQYEAALNKLGYSLERRYSRNMGKTLSTAKRLAPKVGTFLLHTRGHVTCVRNGEMVDWSAANGSRKRIISIHEVIKN*
DelMOSpr2010_100154403F075987AGGAGMIDTEDIDITSPEEGVISSKAXEHMVDNLALDELYSLRFTDVRFVLKDLLXXKYKRMAPTELHKLHKDRFSYSYSDTGESTWE*
DelMOSpr2010_100154405F083394AGGAGMNKIKKLIKRVQFEIKAVYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFEINGRMFDI*
DelMOSpr2010_100154407F063586GAGGMDKLKTLIEFKILCDAHDWYYERSEDPRAYDKGSENRKYLERIMREGGEEYKRIYFNYES
DelMOSpr2010_100154409F027055GAGGMNTYQKITIAAALTCAFAWVSSDELDHDIKQAEQYKQDVCTGSMPDFKNIKPNCEE*

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