Scaffold DelMOSpr2010_c10015440

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10015440
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3837
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027055	Metagenome	196	Y
F035746	Metagenome	171	N
F063586	Metagenome	129	Y
F075987	Metagenome	118	N
F083394	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1001544012	F035746	GAGG	MKEHKHNFSKLHHVATTYYKETNCCTVVAVAVAANIGFGKAYHAMKREGRKDRRGAYFAQYEAALNKLGYSLERRYSRNMGKTLSTAKRLAPKVGTFLLHTRGHVTCVRNGEMVDWSAANGSRKRIISIHEVIKN*
DelMOSpr2010_100154403	F075987	AGGAG	MIDTEDIDITSPEEGVISSKAXEHMVDNLALDELYSLRFTDVRFVLKDLLXXKYKRMAPTELHKLHKDRFSYSYSDTGESTWE*
DelMOSpr2010_100154405	F083394	AGGAG	MNKIKKLIKRVQFEIKAVYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFEINGRMFDI*
DelMOSpr2010_100154407	F063586	GAGG	MDKLKTLIEFKILCDAHDWYYERSEDPRAYDKGSENRKYLERIMREGGEEYKRIYFNYES
DelMOSpr2010_100154409	F027055	GAGG	MNTYQKITIAAALTCAFAWVSSDELDHDIKQAEQYKQDVCTGSMPDFKNIKPNCEE*