Scaffold DelMOSpr2010_c10013442

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10013442
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4164
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F038646	Metagenome	165	Y
F040073	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100134423	F040073	N/A	MLKFEQSAEDSFWQEKMIRSIKDCTSLSELKEMAILLTKIATQRQIAIKGLVKDALELMQENYSHKLQEHKD*
DelMOSpr2010_100134425	F002333	N/A	MSIQTQHELNAAQACIYTRTNIARAYQGFDDSEISGIYLRDGNCIVVRRDGDEQAYDRELIKVAYSSYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYSHALGHLTHNAKLQQHWADKFIHVSDPGKITTLLQSDQTDLGHLVAPDGLRLPNRPIDMDSELDNGSEQESMFGKPSCSCGSFQRQLSNLSAFQEEIQGFEPWCIHLTWFNRYRELLCKRTEARNASPSGTPEKCVAWWYAPPSDHISDGRFVLLYTNSGAQAPLSHWRTYKYKEVFTQHDAWDLFFNMMDVGYVPFPGTVLXSXQICH*
DelMOSpr2010_100134426	F038646	N/A	MNXADDILEYXRQLAMQPPMTPPKDXDYRLQISPDTXWELVKLAAELRMDPESYAEEILXMHAEDAISKRXVAKAYNDPSWVTXLKLXCVDEPDGTMSIHIEWDEKDPDLQYWTNLGAKGXENFILTALRSACNDVLSTHVD*
DelMOSpr2010_100134427	F002738	N/A	MFYPLMSIDTYGLSSEQYEEFFEKNVRFGAKLYLKTXNXLNEEGAGHIDFKTILDIYQEAVYTANDDCRRYQKSNNPEALKEATADIFGITPTREELMEEIQLVSAKVEALVDYINNLITVTTAGLDGIATTLDNKVD*
DelMOSpr2010_100134428	F013517	N/A	MFESLFATVLPVMKDLLWAAAGMLLTYVLNKVQSQFTYEA*