Scaffold DelMOSpr2010_c10004132

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10004132
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8169
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y
F038646	Metagenome	165	Y
F041147	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000413211	F008128	N/A	MEPVYKTKLTVSFAIDLEVEYNSFGGKTVDEIAEALQDDLDDLLFELPHVEGVYTTLTNLGFND*
DelMOSpr2010_1000413213	F041147	N/A	MDTTDEPIDTINQWQDWYRKHRIVAEMDVPLATKDSREQLHDTSKTTTILDGSNNLLTDYCTAMSFQKAKEYFADTIAEFTNELSGKELYKAFYAAAMDNMDAVEKEYNKAKQLVDMLRCNNVAP*
DelMOSpr2010_100041323	F002333	N/A	MSTQLQQQELNAAQSLIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGTEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWHYSHALGHLTSNATLQNHWADKFIHISDPAKLTALLQSDQTDIGHLVAPDGMRLPNRPIDMDSELDDGSEQKPVLSEPTCSCGSFQRQLSNLSSFQEEIEGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPKDAVSDGRFVLLYTNSGAQAPLSHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK*
DelMOSpr2010_100041324	F038646	N/A	MTDDLIFATRGIENFCLGTKCPSMQLNITPKGDDDILDYARQLVTDQPMKLRDHHKYDLEIPSDLHWELVKLGAELKMDYEVYAEEVLKMHAEDAISKRITAKAYSDPSWVYKLSLECVEEEDGTMSINIEWDEKDPDLQYWTNLGPKGQEDFILAALRSACDSVLSDHDN*
DelMOSpr2010_100041325	F002738	N/A	MTIDTYGLTFDQYEEFFDKNIRLAARLYLKTCNILNEEGAGHVDFKTILDIYQETIYAANDDCRRYQKSNNPEALKDGDLYNISPTREEIMDEIQSVNAKVEALTNYIGNLVTVTTVGLEGIATTLDDKVD*
DelMOSpr2010_100041326	F013517	N/A	MFESLFSAVLPVMKDLLWAAAGMLLTYALNKIQSSFQGIPS*
DelMOSpr2010_100041328	F001018	N/A	MTNQITQAKLKDLNVIKLYEHYAALEKSLPLLTPESQELAKAELESCATLRSEKIDRIYYAMASHEDALERIKKEGELITQAKRHHESQLKSLKGLLNYLRRVLPLDTNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCITEEVTTTKRVVLRSMSGEVLSERTEPKTTTKTLPNLDAIRSAYQEGQQLPSGVKVLQEYSVRSKRIFSEPKLDLVSSEYPGELLPEDPSAD*
DelMOSpr2010_100041329	F025982	N/A	MSCHEHAIKDFDLQLEMNGLQMEMLMEDGKVLDYHMSEYEDLEQKKLKLLVGKRFHQNASNAYWYWTQREKSGK*