Scaffold DelMOSpr2010_c10001655

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10001655
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13405
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076102	Metagenome	118	Y
F088749	Metagenome	109	Y
F104983	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100016554	F088749	AGCAG	MDLEGKVSFISGFTLTSLWTMPLMEFTMAFFLGLIGGLGGLVGKLIFKKVEKWKNK*
DelMOSpr2010_100016555	F104983	GGA	MINYQEIINLFELAVGENQFFKGFGHGSIDNLDSVVNRGYPLLFIRPLSSPGLSGQDGRVRTLTFEMYSLDVPKLSDQDRRISLSNTEQGLYDVYGYILDGPAQYDFDMQFTNIVPTIEAFGDKAAGWVGTFNIESTASGISYCNIPGNSWPAE*
DelMOSpr2010_100016559	F076102	N/A	MKDLVISAIANYLPEKIKIYIESLNLCGFTGDKVMICYNIPTETIDYLKSNGWECYGMQLIGHPHMRRLVDMWYFLSNDSRQWNHIITTDVRDIVWQTNPSDWLEQNLQSQIIVASENIRNDDEPWAKKNIHEGYGPLFWESIKSNTVANVGVMGGKYQSMKDLLGLLWLVSQGGDTTHFTDQSALNLIVNNTLLSDKVKLTSEFALQVDSLKNLKRFEKKEIKIKDGMVMNGEEPYVLVHQYDRIEELNKVITEQY*