Scaffold DelMOSum2011_c10071917

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10071917
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1241
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100719172	F019555	GAG	MFRIILKNKFKERKIDLSIVSRVMYHQPFTGSIQLEHITWWKRYWIKPILLEILYPKKGWITLVKVFRDGKPSIRVITKLASSGKRELSITKQLYGEEVIHEQKRKKKLEQFRNKQKNMQTIDITQSVE*
DelMOSum2011_100719173	F068133	GGAG	MQLAIDVFIDMFKSKEIYVIIGSAIVVWIILEWNDV*