Scaffold DelMOSum2011_c10055849

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10055849
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1520
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018266	Metagenome / Metatranscriptome	236	N
F028035	Metagenome / Metatranscriptome	193	N
F046634	Metagenome	151	Y
F076505	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100558493	F018266	GAGG	MFRVILENKFRENPINLSRAVKLLYNQDFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVVTIPSGSDKRELLVLNKIYGGNQ*
DelMOSum2011_100558495	F046634	AGGAG	MTTQQTFIPYTESKSAEDRIAXVKANPGXYMPKAQYXXXKSLITKIDALDSKMNEILAKK
DelMOSum2011_100558496	F028035	GAG	MITYNMEVQLEGDTDKCGNYITVQYEFPFPENSVLIXRDKXMNRILTKPIIITTSNNNNCQQ*
DelMOSum2011_100558497	F076505	N/A	GLLAILSSFVMSFLGVILMIHLDFWLGVLLTITGMVCLLKALPRINEEI*