NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold DelMOSum2011_c10029875

Scaffold DelMOSum2011_c10029875


Overview

Basic Information
Taxon OID3300000115 Open in IMG/M
Scaffold IDDelMOSum2011_c10029875 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2428
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F004988Metagenome / Metatranscriptome416Y
F021188Metagenome220N
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
DelMOSum2011_1002987510F021188GAGGMKMTEELDIIWIPEEEAKHSLTVENAQGVNELVDLPASTVDRICKKKFGHTNWARMGAIFPEELGRNPHEIDYLEGIVYFKNSRMV*
DelMOSum2011_100298754F004988AGGVPKLVETICPRCDGNGYIRIPPVIAGVFDKATEADCPMCEEVITHMGQRITTHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE*
DelMOSum2011_100298755F090883GGAGGMVTTALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH*
DelMOSum2011_100298756F046006GGAGGVKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDRLNNTINTMWHEIVQVKETNISLYQFIEEHGNDITGR*
DelMOSum2011_100298757F000720GAGGMTLQDDKIMRHEIPNRMMSTTFTLPIDNRKVIGIVNYIAGSEGITPLAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVNYFNKNVEEIIMGQQSNKKQRMLSTDPYASQMKE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.