Scaffold DelMOSum2011_c10013348

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10013348
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4201
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013081	Metagenome / Metatranscriptome	274	N
F043091	Metagenome / Metatranscriptome	157	N
F084727	Metagenome / Metatranscriptome	112	N
F100936	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1001334813	F043091	N/A	MELTEKKLEKISGAIISSFINLHLLEDADKIGLFRQRVRNNIRRTISDLKDIEINYYNKIEEVDEKELGDKLIANKLIFIDWVLNKFDFNDFCKIQEVCLAYEADKERITQVTDEVLINNGAEQIDE*
DelMOSum2011_1001334814	F013081	AGGA	MDLIKIVKTIEPEYKNTDQCINPLPNEVELMLDNEDYLIEVNLKEDVLKTNFWQGEKKYNASSDEIDFIYNHLEQLLLSKIEETKEYYNEHNYNYQLWN*
DelMOSum2011_100133487	F100936	N/A	MEKYKLYITSESGERETWTNGETVKECIDKLKDFHTFGEFEKEFFTKKGEDRLNKELNSGWYINLKNK*
DelMOSum2011_100133489	F084727	N/A	MKLGNLIERITYYTGIKWIWKKLYPDCKCKERQEHLNDIELW*