Scaffold GBSCECS85c_c1004317

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GBSCECS85c_c1004317

Scaffold GBSCECS85c_c1004317

Overview

Basic Information
Taxon OID	3300000109 Open in IMG/M
Scaffold ID	GBSCECS85c_c1004317 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2636
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Source Dataset Sampling Location
Location Name	Great Boiling Spring, Nevada
Coordinates	Lat. (^o)	40.67	Long. (^o)	-119.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089858	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSCECS85c_10043178	F089858	AGGTGG	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEVWIKELDDGRFAINLDDPDDPKITCAEVQVVREDLEEETIKAKDVKCVIIGDIPDMGRARFVRMREGVREVEEE*

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