3300000109: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C

Overview

Basic Information

• IMG/M Taxon OID: 3300000109
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0060837 | Gp0052109 | Ga0026017
• Sample Name: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72039733
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	5
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Great Boiling Spring, Nevada
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Great Boiling Spring, Nevada
• Coordinates
  • Lat. (^o): 40.67
  • Long. (^o): -119.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027047	Metagenome	196	Y
F084856	Metagenome / Metatranscriptome	112	N
F089858	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
GBSCECS85c_c1000549	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota	14509
GBSCECS85c_c1001130	All Organisms → cellular organisms → Archaea	8102
GBSCECS85c_c1004317	All Organisms → cellular organisms → Archaea	2636
GBSCECS85c_c1007966	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1421
GBSCECS85c_c1008508	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1309
GBSCECS85c_c1009188	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1194
GBSCECS85c_c1013457	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	767
GBSCECS85c_c1014099	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	732
GBSCECS85c_c1018543	Not Available	567

Sequences

Scaffold ID	Protein ID	Family	Sequence
GBSCECS85c_c1000549	GBSCECS85c_10005493	F084856	MSXTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGYYQKKFQPSDFQCLETYDGVELVPVDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQSSKAHKK*
GBSCECS85c_c1001130	GBSCECS85c_10011305	F089858	MEWVEYLVRLRFXVXGFYPEKLTKEYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND*
GBSCECS85c_c1004317	GBSCECS85c_10043178	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEVWIKELDDGRFAINLDDPDDPKITCAEVQVVREDLEEETIKAKDVKCVIIGDIPDMGRARFVRMREGVREVEEE*
GBSCECS85c_c1007966	GBSCECS85c_10079663	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQMVREDLEEETIKAKDVKYVIIGDIPDMGRARFVRIREGVREVEEE*
GBSCECS85c_c1008508	GBSCECS85c_10085081	F089858	MEWVEYLVRLRFHVDGFYPEKLTKEYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND*
GBSCECS85c_c1009188	GBSCECS85c_10091883	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQMVREDLEEETIKAKDVKYVIIGDI
GBSCECS85c_c1013457	GBSCECS85c_10134572	F089858	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSVPELEEEGLMEIMVSDVGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCVEVQVVREDLEEEAIKVKGVKYAILGDIPDMGKARLVRVRKGVREVEEE*
GBSCECS85c_c1014099	GBSCECS85c_10140993	F089858	RFHVDGFYAEKLTREYVEREVRRKLSIPELEEEGLMEIIVSEVGVDGLLNIPVKHGELWIRELEDGRFAINLEDPDDPKITCVEVQVVHEDLEEEMIKAKGVKYVILGDIPGMGRARFVRIREGVREVEEE*
GBSCECS85c_c1018543	GBSCECS85c_10185431	F027047	ILSAVVYSLSMYVKKHLNPDNPQSFDTVKFLTTLIWGIIVGAILQFSGLPITEQSVEEQFIAYAGLIAITENIVKAIVRALSR*