Scaffold DelMOSum2010_c10194214

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10194214
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 688
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026152	Metagenome	199	Y
F042572	Metagenome / Metatranscriptome	158	Y
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_101942141	F026152	AGGAGG	LTKKKLEKSKTPKHWTAKAWAEHMXXIXGFTDIKEVKSVQSNTRRKVSRKSNKSKQSSE
DelMOSum2010_101942142	F080091	AGGAG	MILKKWKLLGIRIKVEDHNGNTYFYDESDCEEHGLGLEYDIEDIXNKQGGTFDEEEVGKKQDT*
DelMOSum2010_101942143	F042572	N/A	MKRNLIVYKVDYVNRHEDYNVLTGRFVRTKRIVMTPDEVNQTDGYWRNHKNVERKFFKQMDGIEGDTYNSRYRVRRINKA*