Scaffold DelMOSum2010_c10089115

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10089115
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1329
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F003154	Metagenome / Metatranscriptome	504	Y
F024562	Metagenome / Metatranscriptome	205	N
F044809	Metagenome / Metatranscriptome	154	Y
F086185	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100891152	F002747	GGAG	MANDANRFFVDVTLEIYVPDQGCGENAVKNENSDAEWFSNEICSQIPKAINKNFQHSERPYSVNWAHKGKVERG*
DelMOSum2010_100891153	F024562	GAGG	MAIIYEKNFTDPNERIVRQFTNCCGASDKGTEFGIVCRGCYSPIEGYMADGDDSQEEFENYIENDSVLERFRTFMNENFFNYEEWHEHIIKDIGG*
DelMOSum2010_100891154	F086185	AGGAGG	MTEPYITXGDLVEILSTDLTEAEIESFLYEWGIA*
DelMOSum2010_100891155	F003154	AGGAG	MDNVSHAMNIFGGYYETERGWRHYRAQGKTYDVQFNPRTLEWKCTCPHHIFKRVQCKHIKEIQEGKK*
DelMOSum2010_100891156	F044809	GAGG	MPTEKQQWLNKYNTYFAATEYNRQHYGKRIKQLKKML