Scaffold DelMOSum2010_c10073429

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10073429
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1559
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017285	Metagenome	241	Y
F037480	Metagenome	168	Y
F044592	Metagenome	154	Y
F086310	Metagenome	111	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100734292	F106118	GGAGG	MKIGDLVRCTTVDGKPVGLVVERFFFVSEPRTHTDIFYVLIPGYEDPFPIRTRQMELVNASR*
DelMOSum2010_100734293	F044592	GGAG	MQVGDLVRYKGSVGIVIGPCTKRWAKPADVWVLWTEDHKPKIENGDFMELVNASR*
DelMOSum2010_100734294	F037480	GGAG	MQVGDLVHMPGAMEKITGIVLRTKPRGHLQKDRVEVYWIEDAEASWEPIKWLAVINASR*
DelMOSum2010_100734295	F086310	GGCGG	MQVGDLVKHSLTEQIGIVLTVVVAKPRRCIGSVQVMWTTQGDSLFSPGTKEWCGEESLEHLTTA*
DelMOSum2010_100734296	F017285	AGGAG	MSYNGTVTCSHCYQRGHNKRKCPSLTEEIKGKYDGNSRMAVKEREAGNENDAQWYDERAEMYRQQYLKRTKIDLATGEKVSNKAAKTARMKKVTCGYCKERGHTRRTCQHVKRDKQIFVEETRRMRIAALESARSTGIGLGSMIPIRSTGYDTDGEWRRDILTLRYVQSVLWDDCHANRTALIVKHIDARKLGAANQSPYTSRDQIQKLVQANSAALRYADAEGQDLPVSSLVPTLDPPKGWLQPTEQS