Scaffold DelMOSum2010_c10029106

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10029106
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3065
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F029431	Metagenome	188	Y
F033429	Metagenome / Metatranscriptome	177	N
F063588	Metagenome / Metatranscriptome	129	N
F095495	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100291061	F095495	GGA	MSRCKACDAIMTEAELKRTDYNTDKPLDLCYNCMSISTSAALAFEGGGLLDTEGEESLDLESLGFDISNN*
DelMOSum2010_1002910610	F029431	GAGG	MNSAKRRQIRREARREALINLTVEVFGWSVVILGAAVMAKVLYIALVYIMLF*
DelMOSum2010_100291062	F019141	GAGG	MSKIKEELIGYEDNDWIDHDDHVRVTEVEEYLFYAMSVAEMQQIARQHIRHDLYTMARSDFDRVHYDTIGMHSK*
DelMOSum2010_100291064	F063588	GGAG	MQFNIAGMFLNVEPRFGIGLDIESVESRPVWTVKDGELSTMAFDGLVLLLPFFIVTLGNVWTEEE*
DelMOSum2010_100291066	F033429	AGAAGG	MITDNTTENDLLAETIEELGQSLTELQQVIADIKQQVNYRGED*