Scaffold DelMOSum2010_c10026897

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10026897
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3231
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023483	Metagenome / Metatranscriptome	210	Y
F028800	Metagenome / Metatranscriptome	190	Y
F035084	Metagenome / Metatranscriptome	173	Y
F072335	Metagenome / Metatranscriptome	121	Y
F078595	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100268971	F023483	N/A	FEDIIKIYAEALEHETGMDVNLRNVFDYDSYELTYDSLTDKIIIKIKGVYVQFEMEDTDIYVVNYGNGSGWQMAYSFAI*
DelMOSum2010_100268972	F078595	N/A	MKNKNVIISDFEIVENNLLGINTDKLINKFLELFSSDPDNMSNSKYVNKLNNFLNEINSNYICVNKLSVNDEGEIFWKFKLK*
DelMOSum2010_100268973	F028800	N/A	MNKIEIIDGHDGFERKVTGTYDLDGNNVYEWELDTYAGMTSIYFKVAVGHGEIGNVNLEDVEDSDCPAINFGEDEGIEIYDEILTYVNDNGYDFIGEEFE*
DelMOSum2010_100268976	F072335	AGGA	MNGGLQAHWQDEWILLKRKWNMMQPDERGKWEDYYDTNRK*
DelMOSum2010_100268978	F035084	N/A	MSKKMSKGYEAQDRVLAGFRRAAKSSNINSAVAKAMRDKKKVKPQNEEVVFSPLALIQLLNG*