Scaffold DelMOSum2010_c10020335

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10020335
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3890
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024563	Metagenome / Metatranscriptome	205	N
F037473	Metagenome / Metatranscriptome	168	N
F056584	Metagenome	137	Y
F074735	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1002033511	F037473	N/A	VKKVEITKEAMVRMVEQKLGFKAFELSSLERANKATIALFLKR*
DelMOSum2010_100203352	F056584	AGGAG	MATLTVRGENGKGLVVLKGAREWIETRATAYRKKGFDVVITWRQK*
DelMOSum2010_100203353	F074735	AGGAG	MNEKKLNKKELIEAIESYEKMIRNKSLMKTFTKHMRGAFVVRLGRLNAELKRRK*
DelMOSum2010_100203354	F024563	AGGAG	MKIEYTTKKDLIKQIEEKGLKPLSMNATIQDMKTYLGALNIEATLKKVAK*