Scaffold DelMOSum2010_c10016238

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10016238
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4511
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035726	Metagenome / Metatranscriptome	171	Y
F046311	Metagenome	151	Y
F056584	Metagenome	137	Y
F063587	Metagenome	129	N
F074735	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100162383	F063587	GGAG	MKQLELKLQVKGEMTDFKKSVPTLEEMIKARKEKPKHMKHFSDKMINDLLRLYSRRF*
DelMOSum2010_100162385	F035726	AGGA	MSLIKKKTEKKTYYSDLTKSAMVKVITEQTGLTLPALERATKIDIENIAVALDVKADYKGGV*
DelMOSum2010_100162386	F074735	AGGAG	MNEKKLTKKELIEAIKSYERIRNNRALMNTFTKHMRGAFVVRLGRLNAELKRRK*
DelMOSum2010_100162387	F056584	AGGAG	MATLTVSSNDNKGIVVLKGARAWIEARAVAYRNKGFNILITWEQK*
DelMOSum2010_100162388	F046311	GGAG	MRTKQQQKNHEAYLRAKAKLIRYLNENEMIVFFLLGLSILVMVGFLAVAVA*