Scaffold DelMOSum2010_c10011994

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10011994
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5497
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F048647	Metagenome	148	Y
F049291	Metagenome / Metatranscriptome	147	Y
F067203	Metagenome / Metatranscriptome	126	Y
F074150	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100119943	F002430	AGGAG	MITLNLPPKQVNAILVALDAEIESQLHGRPVDWESFPEVAALLIAYYNTRCKFEXNQDV*
DelMOSum2010_100119944	F074150	AGGAG	MPKYEVTRSYTVACVATVEAESVDQAERMAFESDLIWKEYDGDYHSQVDVEEIDNDNA*
DelMOSum2010_100119945	F048647	AGGAG	MTKKLYNVKIDLTVWYDRNFLVEAYNAYEAEDKARDIAKWQTMHLIGTDIPVESDGDWTYGDQDYSTAYVELEE*
DelMOSum2010_100119946	F049291	GAGG	MRTSIKKMRIKKVSKKAPAWEQQRLKDQSWRVTIINRSFDLAETDDEAIALHQGRRYP*
DelMOSum2010_100119948	F067203	GGAG	MTMTWDEIEHYELSEKDQRYMAMYGCTQDDMLCMMNDPINFIGGHQTLAISILSDAQEVMSYDPEKARQLINKAKYVIRHLRDIDL*