Scaffold DelMOSum2010_c10010948

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10010948
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5827
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F022282	Metagenome	215	Y
F022555	Metagenome	214	Y
F062169	Metagenome / Metatranscriptome	131	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001094810	F021674	GGTGG	MERETYNTRLKTNPEEIPVGSLMRCKKHCRNNITIQKNGEYAILAQSTYRKGKAKYITHDALFPNGTRCIFMPVNWEVVSYVR*
DelMOSum2010_1001094811	F006383	GGAGG	MYDKMWEVQQPGTLLRARSSHQYGKLALVLQEAYAGPTPSNGYPPRQYVKMQWLATGERFEEMLTNAHNCFDIVGSCDTLGPEEN*
DelMOSum2010_1001094812	F022555	AGGAG	MAITPKFKPGQLVEYNXPANPLVGLVKSTQFARRRGDPVFVLVQWCNNRAEEEYIPQSDLKLVEGS*
DelMOSum2010_100109483	F022282	GGA	VDPRFRYQLGDLVEFKRTVRVTEEYIDTEKLTGIVVEQRYVFTADNKFKVRTPDKDYWIRADHLTLLSSGTK*
DelMOSum2010_100109484	F062169	AGGAG	MSVQDHIENILNAEGQATLDAWYVAIHEHPQNAMEIHDVVVDHLVENTFLY*
DelMOSum2010_100109486	F006867	GGAG	MLYGKELVKSIQKRCKVQPGMLVNSTAGTEVSKVALVLGLSPACSFERDYEGAEEHIFYVCQPFDGTPDFVDYACNMEKFS*
DelMOSum2010_100109487	F105878	GGA	VKVGQIIKLTPQGLKNFAPAIRKRLEGEIGLVIQEKYDLSHKLDQDKLPERVKVYPALVRFESLQSMNFLDMGAVMVFPDQAEIVS*
DelMOSum2010_100109489	F015346	GAG	MNHKLYKVGDLVAVASNRVLGIITRSNYWMTDEYLGGEVELVDVMFGSSVSRQYPVRYLVDL*