Scaffold DelMOSum2010_c10004804

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10004804
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9647
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F006866	Metagenome / Metatranscriptome	363	N
F014252	Metagenome	264	Y
F036928	Metagenome / Metatranscriptome	169	N
F037181	Metagenome	168	N
F065692	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000480413	F037181	N/A	MSVIAPDQLVGARSPIYLTANYSSLASSITDITLEIYVWAGSRSSRPSTADYTLFRDVFAGTDVSFDIAPMVREEIGAVYDTNQTRTSPTGEKNNNIVWVQVDYDINYYDKADPPSVANVTGSTDIFPASNGYHIFSEGTNFEFPSAYLNNTSTVYVEDNGYEMMSLFQGKYANEVIENVIYRIGGATTYSFDITGYYADVQPEDRILRIPIGELGLNNWLTTDGYTGASSDRPINQSEWVLELNSQGSVFDTITVIKECEPKYTINTIQYINRYGTWDFIHFYKASQDNFSVTSERFRKSIGTSSSSGFTYDTTDNIYQQFNTNGKVTTTLNTGWVTEDYREAIKDLMMSEKILLNGLPVNVVTNSVTLQKSINDRTINYTIEVEEAYDTRYV*
DelMOSum2010_1000480415	F036928	GGA	MYSQLGYLIKALKETNERDEDIRTAKGKYQYPRTFKEALGKWR*
DelMOSum2010_100048043	F065692	AGGAG	MIFKVIRSKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP*
DelMOSum2010_100048044	F014252	N/A	MNDQEKETKILFYLLAFTIAMFALSVLALVYVYVHPTISL*
DelMOSum2010_100048045	F005010	GAG	MKTELKMIKGYLRKTRHIREVQKYLDMLMIDNINLSIQASRFGWTPELQHQLTNSALLIRKYQRRLRLIKF*
DelMOSum2010_100048047	F006866	N/A	MEEQGKSANVLINRNNLNNIFELLVQIHMRGQLSRDEQAFVKNFIELPEAPTRENRQARRANTQTIKKLFREEAKKRKEEK*