Scaffold DelMOSum2010_c10002776

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10002776
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13270
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (21.88%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002629	Metagenome / Metatranscriptome	542	Y
F006815	Metagenome / Metatranscriptome	364	Y
F010919	Metagenome / Metatranscriptome	297	Y
F011006	Metagenome / Metatranscriptome	296	Y
F015148	Metagenome / Metatranscriptome	257	Y
F076259	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000277615	F076259	N/A	MSQFEKLGYFLEYMIDDKYIGSMIIEKPDRKEIGYYGRIDXIATHDIIFKNKKIKKGQSFYTRMYPLCGKKL*
DelMOSum2010_1000277617	F002629	N/A	MKVNDAAWEKLKKQIEYYTDADTSISDISINYQVKETKNKNYLRLNITIDKWDKITE*
DelMOSum2010_1000277629	F010919	N/A	MKDRINLPLEEFKKLYAIKIRLETYFSYMEDNRGVLKHIAPTFLEDAKSYIEKYNELTNEKV*
DelMOSum2010_1000277630	F011006	N/A	MKQIIDKFLIKKSIRPYKTIALSTGVIVEHYRNGKLKTEYYGLV*
DelMOSum2010_1000277631	F015148	N/A	MDWYSTPEYPEYECTECGADIDKPGVCSGTCHEASMI*
DelMOSum2010_100027765	F006815	N/A	METNFSKETAKSKFDEYTYRIEALCNRIEELKAQIEVSQIFKQNG*