Scaffold DelMOSum2010_c10002137

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10002137
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15395
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (26.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009493	Metagenome	317	N
F030897	Metagenome / Metatranscriptome	184	N
F044500	Metagenome	154	N
F047307	Metagenome / Metatranscriptome	150	Y
F047926	Metagenome / Metatranscriptome	149	N
F084220	Metagenome / Metatranscriptome	112	N
F094426	Metagenome / Metatranscriptome	106	N
F100722	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000213710	F030897	N/A	MQVEAGVLHLEHKGIEVEVSVIWDLEQGGPLYAMKDGKIFMSLSPEELKALYVLYRDIELKGTVEDA*
DelMOSum2010_1000213717	F094426	N/A	MYLTNYTADRVRLAYTFAEHLRHNWRELSDSKRDALLKEITDLTNVQLIEQQYESRIDKIQSDGTYDKALRRAKLGL*
DelMOSum2010_1000213721	F084220	GAG	MDYLSRELEEYQYRIDTTCEKCGESTDPDYYDCKCSDEEE*
DelMOSum2010_1000213722	F009493	N/A	MRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKEQLGHNKGAPFNSFRVTAYVRYRYDLDNSIIAVKFTSDALKTLGWIKDDSPKYFRHLLLVWSEQIPRDEAQITIELSDEHP*
DelMOSum2010_1000213725	F047926	N/A	MYIEIAKNTWAYAKDEKDAERIRAKYKDYKKKQGDLTSRHFIVNYIEETNFIK*
DelMOSum2010_100021374	F047307	N/A	MRGNLYISVPAADSSKAIPASITRYDWVENTYNEEGEVESSNTIHPTWSQYGERYAPQYGAPVSVTVGTKSFVVYELTASWKDSEVSALVNLGSGKAEPNYTVMTAEEARAFIAANQEAEL*
DelMOSum2010_100021375	F044500	AGGCGG	MEQLKLKAQEIKARLKARFKALRDIWQYSDSQPTEITLAVALVFLYPTATYLELGYSPIMDVLGPMAGIYQLYCVSGKCLSCRVRASFITFSFYLLATVMYLYCGMLFSSPTYLGWLVLCFSSFGSLKRIKKEELHRKNG*
DelMOSum2010_100021376	F100722	GAG	MDNSTQIVLAVVTLLGSAGIWKYAEARLRVKADLKKEEQSTSDTVLYRDDLKSRVEEMDKALKEANKELLALTQKVAKLETENTFLRREIDILKSK*