Scaffold DelMOSum2010_c10001092

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10001092
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 22280
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F016832	Metagenome / Metatranscriptome	244	Y
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F073424	Metagenome / Metatranscriptome	120	N
F080238	Metagenome / Metatranscriptome	115	Y
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000109211	F016832	N/A	MSRTINYTTRTFYVPADKLEILIKFQNKCKENGHKSYSEVILKLMEGYNNG*
DelMOSum2010_1000109212	F081203	GGAGG	MDKYEFYYRKKQEWDFWQCNERHNVLSNRLLNIIIQAQYNKRLITKFKLTNNDIEIHQNRFSNLITEVVKISLELKDLAINYNPKRIQNIIIILTKIKNYNNETIKNS*
DelMOSum2010_1000109217	F005706	GAG	LKALGLSSLDIQTMLMNGMTMPEISKKYNIKYIALIQAFKIQKKEFKYIDFKQPKKEVEDIKDVSFTSERLYTEDSLNDNELLAYYKYEQKNHAYYDSQ*
DelMOSum2010_1000109221	F038672	N/A	MDELDVILRKNKLDIMIIKASAEVEKTNNKVKKEGLEILMDILELIHDLQHEIRQDNRLISKLKYENAVAYKENAILKADFSKYKHQLIKAELETPNKIKKNG*
DelMOSum2010_1000109226	F056150	N/A	LNKKLIKKIENFILWIGREYNVVELQDFKQDIFMILLNKGEDFIIQLDKENSVKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIDDIETYSNSCFKDQVLKDLINSLQGLDRIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKEKWSLNEFYS*
DelMOSum2010_1000109230	F043411	GGA	MFKEKMLKRRLTYNNKRVFIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVDFK*
DelMOSum2010_1000109231	F073424	AGTAG	MKLTPKEIKEQKAKFGSEAVNYFIRFMEARRKWRRLPDSFIKQVIENSEKQ*
DelMOSum2010_1000109235	F029278	N/A	MEITIPTKWSDVTIGNYINLRPVLNSDLQPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLKDKRFKIGGQWYEFKLDAKKLLFGEYINSMEILQNAKDDQEAIFNNLHHILTTICRPVKKTIFGWKYIKVDGEILRKTADNFLNNMPITIAYPIGVFFYSHSEDLTKAIKTSLMDQAKKMTREAKKELDLLRDGDGGVH*
DelMOSum2010_1000109237	F020903	N/A	MAEQLDIFGFDTDQLEEVKVDNPTTLSEVFNNIAADMVYCLKQSVTKEGLVYKGKLHDSIRMPVKMFGFKMIATLFLADYYDYLNKGVKGIGGTRKSGDKKGQGWVIKAPNSPYQFKKGPSVSHIKAWSKSKGLNEYAVRNSIARTGIKPRYFFDNCMQQTFYGEAFNRFKTDIRIVSGERIAKGIKEILKK*
DelMOSum2010_1000109239	F080238	N/A	MKEKETEFEKMLRNLESKPVPERTCNIDDETCESCSG*