Scaffold DelMOSum2010_c10000549

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10000549
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 32569
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (34.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F044418	Metagenome / Metatranscriptome	154	N
F048843	Metagenome / Metatranscriptome	147	Y
F064621	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000054929	F014724	AGGAG	MKEELKQIKGAIDGLSDEMLEHRRHANMDDLVKVMKNINENLYSITFALEDIVKEKKMQNELTVALR*
DelMOSum2010_1000054930	F044418	N/A	MKLEESKQIEERAIYYAQAWYEANDLETEKKHGNDLYLRVNDNVFTEVSHCDIRQKAMLWLESELEGVNNY*
DelMOSum2010_1000054981	F048843	N/A	MSKITEKAKKEKYFVFSVPTAYVYEIQAKTEKEAREILVEHGGIEIHGDQCEMLAEDYENADLEETYEM*
DelMOSum2010_100005499	F064621	N/A	MINKKIEKFIQDNDLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK*