Scaffold IMNBGM34_c026576

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold IMNBGM34_c026576

Scaffold IMNBGM34_c026576

Overview

Basic Information
Taxon OID	3300000036 Open in IMG/M
Scaffold ID	IMNBGM34_c026576 Open in IMG/M
Source Dataset Name	Passalidae beetle gut microbial communities from Costa Rica - Gallery material (4MSU+4BSU+3MSU+3BSU)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	730
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Source Dataset Sampling Location
Location Name	Quebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
Coordinates	Lat. (^o)	10.207151	Long. (^o)	-84.007673	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001877	Metagenome / Metatranscriptome	623	Y

Sequences

Protein ID	Family	RBS	Sequence
IMNBGM34_0265762	F001877	GGA	MLGPSRPVPREGTRARVAHFGGDYESATVLAVSEQGRRLSVLCESGETLDFVLHPATARFVASGLGQGPRLELLG*

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