Scaffold IMNBGM34_c012605

Overview

Basic Information

• Taxon OID: 3300000036
• Scaffold ID: IMNBGM34_c012605
• Source Dataset Name: Passalidae beetle gut microbial communities from Costa Rica - Gallery material (4MSU+4BSU+3MSU+3BSU)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1058
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Source Dataset Sampling Location

• Location Name: Quebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
• Coordinates
  • Lat. (^o): 10.207151
  • Long. (^o): -84.007673

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044271	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
IMNBGM34_0126052	F044271	AGGA	MSAPAPIPREEFEHFLVALTHEIRNRLNGIALEAADIAELAGPPADATRLQEYVQECSAFLKKVRETWAPDDAHVAREKLAVTAKELRELKI*