Scaffold CowRDRAFT01_c0174918

Overview

Basic Information

• Taxon OID: 2236876025
• Scaffold ID: CowRDRAFT01_c0174918
• Source Dataset Name: Switchgrass-associated rumen community WFO
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 615
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Switchgrass-Associated Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location

• Location Name: Urbana
• Coordinates
  • Lat. (^o): 40.1
  • Long. (^o): -88.26

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093041	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
CowRDRAFT01_01749182	F093041	N/A	MMAKSEKVFRRTALRRSKTARLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIRRSVHPEQETEGEKP