Scaffold none_p167854

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold none_p167854

Scaffold none_p167854

Overview

Basic Information
Taxon OID	2236876008 Open in IMG/M
Scaffold ID	none_p167854 Open in IMG/M
Source Dataset Name	Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of South Carolina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	526
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Cape Meares
Coordinates	Lat. (^o)	45.483	Long. (^o)	-124.918	Alt. (m)		Depth (m)	1200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073670	Metagenome	120	N
F090849	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
none_1678541	F073670	N/A	TENIAWWSDTTFEEWVSDTVALRLACQQNPSETFFYCVGFDYYHDQTKDGIFLGSSVIEFHNEKQDSWIGQHKHIEEEYPNSKFIFVGKDMDYGEFENLLNK
none_1678542	F090849	AGGA	MAAANIVPDNLNYLSNISFRLTMLDAPNLTWFCQATNVPGVSIEGIDVFTPYVTIPYAGNKVSF

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