Scaffold none_p171390

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold none_p171390

Scaffold none_p171390

Overview

Basic Information
Taxon OID	2236876001 Open in IMG/M
Scaffold ID	none_p171390 Open in IMG/M
Source Dataset Name	Marine microbial communities from Columbia River, CM, sample from CR-7km from mouth, GS312-0p1-CR7-chlmax
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of South Carolina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	514
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Columbia River Transect 7 km from mouth (CR7)
Coordinates	Lat. (^o)	46.167	Long. (^o)	-124.158	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014670	Metagenome	261	Y
F051973	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
none_1713902	F014670	AGGAG	MGDEKLYNDVHNYTKFKLVEMLINRLNDGRTKVDDMNSIEDLADEVLQTLAIAGLKFYSD
none_1713903	F051973	AGGGGG	MRIGIDCDGVLRDLITCITDTVKETHPQHADKILEPTSWIGSMVTF

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