NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold TM7x89Draft_c00199

Scaffold TM7x89Draft_c00199


Overview

Basic Information
Taxon OID2236661024 Open in IMG/M
Scaffold IDTM7x89Draft_c00199 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Stanford University, California, USA - TM7-9 pangenome assembly 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)165477
Total Scaffold Genes179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)115 (64.25%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral → Human Oral Microbial Communities From Stanford University, California, Usa (12)

Source Dataset Sampling Location
Location NameOak Ridge TN
CoordinatesLat. (o)35.92634Long. (o)-84.31646Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078842Metagenome116N

Sequences

Protein IDFamilyRBSSequence
TM7x89Draft_0019954F078842N/AMIISSIYKTADNDGLIAHIYEHLLAQYVLKYLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNMLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEALKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSASSFCDNLEAALVRCSHNYEQVQLDRDTLNSILGGCVIGDKGWLKIADNTLIGQILKAIEIDIYDI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.