Scaffold TM7x89Draft_c00199

Overview

Basic Information

• Taxon OID: 2236661024
• Scaffold ID: TM7x89Draft_c00199
• Source Dataset Name: Human oral microbial communities from Stanford University, California, USA - TM7-9 pangenome assembly 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oak Ridge National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 165477
• Total Scaffold Genes: 179
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 115 (64.25%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral → Human Oral Microbial Communities From Stanford University, California, Usa (12)

Source Dataset Sampling Location

• Location Name: Oak Ridge TN
• Coordinates
  • Lat. (^o): 35.92634
  • Long. (^o): -84.31646

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078842	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
TM7x89Draft_0019954	F078842	N/A	MIISSIYKTADNDGLIAHIYEHLLAQYVLKYLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNMLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEALKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSASSFCDNLEAALVRCSHNYEQVQLDRDTLNSILGGCVIGDKGWLKIADNTLIGQILKAIEIDIYDI