2236661024: Human oral microbial communities from Stanford University, California, USA - TM7-9 pangenome assembly 1

Overview

Basic Information

• IMG/M Taxon OID: 2236661024
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0051051 | Gp0053577 | Ga0011251
• Sample Name: Human oral microbial communities from Stanford University, California, USA - TM7-9 pangenome assembly 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Oak Ridge National Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10420506
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Stanford University, California, Usa (12)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral → Human Oral Microbial Communities From Stanford University, California, Usa (12)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: Oak Ridge TN
• Coordinates
  • Lat. (^o): 35.92634
  • Long. (^o): -84.31646
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066860	Metagenome	126	N
F078842	Metagenome	116	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
TM7x89Draft_c00199	All Organisms → cellular organisms → Bacteria	165477
TM7x89Draft_c00201	All Organisms → cellular organisms → Bacteria	48863
TM7x89Draft_c00836	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1737

Sequences

Scaffold ID	Protein ID	Family	Sequence
TM7x89Draft_c00199	TM7x89Draft_0019954	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKYLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNMLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEALKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSASSFCDNLEAALVRCSHNYEQVQLDRDTLNSILGGCVIGDKGWLKIADNTLIGQILKAIEIDIYDI
TM7x89Draft_c00201	TM7x89Draft_0020145	F103433	MIFVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYXXPFLWSMNFSVIGAFXWLALMPGXAXPXAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE
TM7x89Draft_c00836	TM7x89Draft_008362	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFIYGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE