Scaffold GBPt_c03595

Overview

Basic Information

• Taxon OID: 2236347000
• Scaffold ID: GBPt_c03595
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Guaymas Basin, Gulf of California - transcript assembly
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Pennsylvania State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 516
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California

Source Dataset Sampling Location

• Location Name: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.823
  • Long. (^o): -111.4
  • Depth (m): 1996

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037503	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
GBPt_035952	F037503	N/A	MHLGAASESSVIEVELLIRLGGFTAYQTLINSECYDICPGVRAWVLRSMSERERTQTIR