2236347000: Hydrothermal vent plume microbial communities from the Guaymas Basin, Gulf of California - transcript assembly

Overview

Basic Information

• IMG/M Taxon OID: 2236347000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045864 | Gp0053903 | Ga0011250
• Sample Name: Hydrothermal vent plume microbial communities from the Guaymas Basin, Gulf of California - transcript assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Pennsylvania State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21125931
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.823
  • Long. (^o): -111.4
  • Alt. (m): N/A
  • Depth (m): 1996

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037503	Metagenome / Metatranscriptome	168	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
GBPt_c03590	All Organisms → cellular organisms → Bacteria	516
GBPt_c03592	All Organisms → cellular organisms → Bacteria	916
GBPt_c03595	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
GBPt_c03590	GBPt_035902	F037503	MHLGAASESSVIEVELLIRLGGFTAYQTLINSECYDICPAVRAWVLRSMSERERTQTIC
GBPt_c03592	GBPt_035921	F037503	MHLGAASESSVIEVELLIGLGGFTAYQTLINSECYDIYPAVRAWVLRSMSERERTQTIC
GBPt_c03595	GBPt_035952	F037503	MHLGAASESSVIEVELLIRLGGFTAYQTLINSECYDICPGVRAWVLRSMSERERTQTIR