Scaffold 2225761471

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225761471
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17024
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.79%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003267	Metagenome / Metatranscriptome	496	N
F004837	Metagenome / Metatranscriptome	421	Y
F005845	Metagenome / Metatranscriptome	388	Y
F006621	Metagenome / Metatranscriptome	368	Y
F009318	Metagenome / Metatranscriptome	319	Y
F021095	Metagenome	220	N
F044982	Metagenome	153	N
F087100	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
2225176245	F021095	N/A	MSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLIAPTAPSPTQTGFVEHSGFYSGYRLDFTQEYGNTPAVTGATTTVSGVMAFAGNLEQLELADWSLSPYFRVGLNFAISRPLTTQKNFTVYKGGRNFLAINATRYTALSGFDNWLVSARVNYKSVDYDFAVTPSLSGITDYNIQRFACGPANLLGSIPALSGAVEGDSYTVQFFSDAIGGLNLTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQLEIAVAYDNNIL
2225176246	F044982	N/A	VSLADGAIENKSYALVTKWLEGVVRLAKQNLANANAIASNSLAQSITVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRAPNSPFRFKGNPIPIRPIQEWIAFKGIPLQGRDKQAANRSFAINIARKISREGLRATNFMSNAATKEMVDVLTVNIAEVLGKSISVATVR
2225176250	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKVVKEILDNSLVAAKVKVVVTRTNAWEQATLTEMYKASQTEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNIVAWERAIAELANVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF
2225176256	F006621	N/A	MPSTKAPSNEEQVQARMDSLMMVITTLCDCIGAVEESNSPNAFAVKMKIVDKIDELIDKIEY
2225176257	F004837	N/A	MTQDEYLLATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAQDNQHTFTHALNQSPQQ
2225176263	F005845	N/A	MKPTPTDXRRWXIHIRKECVSCSKPDRSETISPWKVNWTLLGRILQAKNA
2225176265	F009318	N/A	MHRLLLLFLLTACTNDRPWTVIEVRPKGDACEYVLSRSNGFGPQLKNITDSCGKYQLFQTINP
2225176267	F087100	N/A	MKCKHCGYEYQRKAQEQGEMVDLHLMTKAQGMQLATTSSMYQKAQLAKAKVISPFWVLHNQCKTKAEALEFIRFMGWKPGWAFHNKDRFPILK