Scaffold 2225746594

Basic Information
Taxon OID	2222084010 Open in IMG/M
Scaffold ID	2225746594 Open in IMG/M
Source Dataset Name	Coastal lagoon microbial communities from Mar Menor, Spain - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University Miguel Hernandez
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2222084010 Open in IMG/M

Scaffold ID

2225746594 Open in IMG/M

Source Dataset Name

Coastal lagoon microbial communities from Mar Menor, Spain - Sample 1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University Miguel Hernandez

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5761
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5761

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (31.25%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location Name	Mar Menor, Spain
Coordinates	Lat. (^o)	37.72955	Long. (^o)	-0.7741	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Mar Menor, Spain

Coordinates

Lat. (^o)

37.72955

Long. (^o)

-0.7741

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F015079	Metagenome	257	Y
F042877	Metagenome / Metatranscriptome	157	Y
F072209	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
2225143255	F009330	GAG	VTLSRYLEKNYADLEQAAYRIAGRDGPDLLHEVILQLYQTKQETIDGLLERGQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSRHIVDWWDGDGVAAHRDELLTHIEQQLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHTLYTTIRRVRKRIQGAGRQDREADQSDGN
2225143256	F042877	N/A	MSQGLFAAIAILSFAQIGVEYYQENQVRVFGLVIVLLSCLGIVA
2225143257	F072209	GGA	MASRTSSLTASTQTLLRGDSGNLTPQNAWQEGTNIRTALRLHPEAVRAWFLAQLGQLIKFVDATKTIQDDDEMKETARALIEEFPAFKLEEFALVFEGIKRDKFGPMYGRLKLGEIMACCRKWEEQRAERIXERQHRPEYDPHTRSSVGEPKRKAILLTEEDLLALGQIKPK
2225143258	F009856	N/A	MKYWFDSEDAQRYGLPAAAVLAHLKYWIERNTHAGEEPCMTQSIKEMGSYLPFLSFDQIRRALEKLQKAEVIYRAANGFDRRHTYCLAESPHANGTDATTKWQESHNDVAALPQVHIETNTSKRTKSDAREWERPKEEDEVVEYLREIGGGDLAPTLGPAFFNYYQANDWMVNGTPIARWKYKAKQWLTNERNRRSNDRRKGFNPDGFTPDGLKDFIAHG
2225143260	F015079	N/A	MQQAQIESIQGNGDWTSKYDGSKMYSFIIAFNDGTVGEANSKSSTPPYAVGDTVYYAKTGKSPKGNDKLQVKKNLPPQGGFAPRKADPNKDKQIIRGMCFKVAGMAWANQYKHKQFDTPHDGDGQGRD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters