NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225746263

Scaffold 2225746263


Overview

Basic Information
Taxon OID2222084010 Open in IMG/M
Scaffold ID2225746263 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Mar Menor, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5408
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameMar Menor, Spain
CoordinatesLat. (o)37.72955Long. (o)-0.7741Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034945Metagenome / Metatranscriptome173Y
F090460Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
2225142397F090460AGGAGMINDKMDDKEYWEGIRDACEYFVALGVEDAMNCDIAVMAEKELALV
2225142399F034945AGGMGDRANVGIRNTDGNTIFLYLHWGGMDRYEIVANAISHAMSRDGDESYFTRIFISRVIGTDWDKETGVGMSINKLSSSGEDEYLVPIYDYTNKTISVHKEKWDNAGGYIDLTPLIVYNRDEYLAEYAVRGVGAYV

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