NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225689133

Scaffold 2225689133


Overview

Basic Information
Taxon OID2222084009 Open in IMG/M
Scaffold ID2225689133 Open in IMG/M
Source Dataset NameTransgenic grape vine soil microbial communities from Colmar, France, sample ColmarContigsOGM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)597
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Transgenic Grape Vine Soil → Transgenic Grape Vine Soil Microbial Communities From Colmar, France

Source Dataset Sampling Location
Location NameColmar, France
CoordinatesLat. (o)48.081Long. (o)7.355Alt. (m)Depth (m)0 to .3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024879Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
2225087379F024879N/AAALALLFTTAPDWYSTTRGEEARQIQKNASGAGQAEREVEEDAGALAESQERNAWQEDALLDRIILIALLATSALGVFAAFWRASGRGSDGLGPFGLTGLAACITALLVLYRTIQEPGFDEMTTVKIGAPLALGVLGVMAFACASAVREPEPAPAE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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