2222084009: Transgenic grape vine soil microbial communities from Colmar, France, sample ColmarContigsOGM

Overview

Basic Information

• IMG/M Taxon OID: 2222084009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047491 | Gp0052326 | Ga0011228
• Sample Name: Transgenic grape vine soil microbial communities from Colmar, France, sample ColmarContigsOGM
• Sequencing Status: Permanent Draft
• Sequencing Center: CEA Genoscope
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126403318
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Transgenic Grape Vine Soil Microbial Communities From Colmar, France
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Transgenic Grape Vine Soil → Transgenic Grape Vine Soil Microbial Communities From Colmar, France

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Colmar, France
• Coordinates
  • Lat. (^o): 48.081
  • Long. (^o): 7.355
  • Alt. (m): N/A
  • Depth (m): 0 to .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024879	Metagenome	204	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
2225689133	Not Available	597

Sequences

Scaffold ID	Protein ID	Family	Sequence
2225689133	2225087379	F024879	AALALLFTTAPDWYSTTRGEEARQIQKNASGAGQAEREVEEDAGALAESQERNAWQEDALLDRIILIALLATSALGVFAAFWRASGRGSDGLGPFGLTGLAACITALLVLYRTIQEPGFDEMTTVKIGAPLALGVLGVMAFACASAVREPEPAPAE