Scaffold DRAFT_c23854

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold DRAFT_c23854

Scaffold DRAFT_c23854

Overview

Basic Information
Taxon OID	2222084002 Open in IMG/M
Scaffold ID	DRAFT_c23854 Open in IMG/M
Source Dataset Name	Subtropical soil microbial communities from Bundaberg Australia-sugarcane farm
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Australian Genome Research Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	552
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Subtropical Soil → Subtropical Soil Microbial Communities From Bundaberg Australia

Source Dataset Sampling Location
Location Name	Australia: Bundaberg, Queensland
Coordinates	Lat. (^o)	-24.9	Long. (^o)	152.39	Alt. (m)		Depth (m)	0 to .03
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063173	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
DRAFT_00390330	F063173	N/A	VPRVSPVNSQVAFRLQFSGIVFNIADLSKGFHGPCLDRVSFPERPLTLFRLFSVFHLADSVFIQNRQSRPSVLIHSSNRLPSGNCDSLDFETSSSYLTESGTVSNRSSFLSPFFAYTDSARTPPEELVKFCLSLRLFRSALGGAGPTSLTQLFPSHLGLSLRRSTS

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