NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2221226121

Scaffold 2221226121


Overview

Basic Information
Taxon OID2209111022 Open in IMG/M
Scaffold ID2221226121 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - Chitin enrichment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)563
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.481481Long. (o)0.222231Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006769Metagenome / Metatranscriptome365Y
F051325Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
2222078125F006769N/AMKPEELFRNAPANIHELRLALAGLPKDMEVKADAETGVSEKTVDELWARTAWPLGLVLTTPRKL
2222078126F051325GGAGMSRKQELLKLAKLFHSQASRTGTPGVKQTLHRMGQYYQNEAAHAPDRDPERQRGPRQFNRYPEQAA

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