NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2221209999

Scaffold 2221209999


Overview

Basic Information
Taxon OID2209111022 Open in IMG/M
Scaffold ID2221209999 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - Chitin enrichment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)920
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.481481Long. (o)0.222231Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004119Metagenome / Metatranscriptome452Y
F055582Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
2222047663F055582N/AMKKQCIRFVEWLRDTWRSLGRTGGRNHDPLLVNSMASFNFDGGWRELLLKTSPKHMPAESTMALIDGPFGV
2222047664F004119N/AMKLSIEAKVAAAIAIAFAALSIGAIAQEQSEHGTAGLNQTSLKGSEISLSVQNASGENQLLAQY

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