NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2218574909

Scaffold 2218574909


Overview

Basic Information
Taxon OID2209111015 Open in IMG/M
Scaffold ID2218574909 Open in IMG/M
Source Dataset NameTailings pond microbial communities from Northern Alberta -TP6_2008_2010:
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)57.02Long. (o)-111.55Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040163Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
2218585756F040163N/ARGGRNAAAPSTTAATRPDCNSTPEEPPTGTMSTPAPELLAEVLRHALDGVAIVEESGGTPRVLYANATLAALLRRPEEWLYGRALDEVEAEAPADPNATVSGVGLRTRLRRSDATMVECERWAVLLDDGRLALYYRPVPRNSPGALAAAVDRSSGLSTPEHLIEVLR

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