Scaffold 2215412717

Overview

Basic Information

• Taxon OID: 2209111007
• Scaffold ID: 2215412717
• Source Dataset Name: Cave microbial community (Dry rock wall)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Arizona Genomics Institute
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 537
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061707	Metagenome	131	N
F085487	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
2214543911	F085487	N/A	FMTQSPKLAWLNTTKGWVEGTADQAPGTFHAKVYSKK
2214543912	F061707	N/A	MQVMRFATRVARAVTLVSFHTEVVESNIENATANLVDGVVEMRKRQGEVLLKGGTLKVLRMGRNVTPSRGYFYQITNQGIVFSSTPML