Scaffold 2207187112

Overview

Basic Information

• Taxon OID: 2199352036
• Scaffold ID: 2207187112
• Source Dataset Name: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_sample_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Alabama State University
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 546
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa

Source Dataset Sampling Location

• Location Name: USA: Alabama
• Coordinates
  • Lat. (^o): 30.15
  • Long. (^o): -88.446

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003154	Metagenome / Metatranscriptome	504	Y

Sequences

Protein ID	Family	RBS	Sequence
2209061729	F003154	GGA	MDTLSLAMNIFNGTYKDERGWKHYRVQDKPYDIRMHPMTLEWECSCPAYKFKRGTKTCKHIKEIQSNPK