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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2199352036 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0050523 | Gp0053125 | Ga0011323 |
| Sample Name | Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_sample_6 |
| Sequencing Status | Finished |
| Sequencing Center | Alabama State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 37685438 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 26 |
| Associated Families | 26 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 13 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 3 |
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 2 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → oil spill → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Alabama | |||||||
| Coordinates | Lat. (o) | 30.15 | Long. (o) | -88.446 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003154 | Metagenome / Metatranscriptome | 504 | Y |
| F003661 | Metagenome / Metatranscriptome | 474 | Y |
| F004907 | Metagenome / Metatranscriptome | 419 | Y |
| F007306 | Metagenome | 353 | Y |
| F009329 | Metagenome / Metatranscriptome | 319 | Y |
| F013470 | Metagenome / Metatranscriptome | 271 | Y |
| F013703 | Metagenome / Metatranscriptome | 269 | Y |
| F018167 | Metagenome | 236 | Y |
| F021645 | Metagenome | 218 | Y |
| F023998 | Metagenome / Metatranscriptome | 208 | N |
| F025617 | Metagenome / Metatranscriptome | 201 | Y |
| F028777 | Metagenome / Metatranscriptome | 190 | Y |
| F032445 | Metagenome / Metatranscriptome | 180 | Y |
| F034342 | Metagenome / Metatranscriptome | 175 | Y |
| F035970 | Metagenome / Metatranscriptome | 171 | Y |
| F036971 | Metagenome / Metatranscriptome | 169 | Y |
| F050774 | Metagenome / Metatranscriptome | 145 | N |
| F058202 | Metagenome / Metatranscriptome | 135 | Y |
| F063841 | Metagenome / Metatranscriptome | 129 | Y |
| F064645 | Metagenome / Metatranscriptome | 128 | Y |
| F066737 | Metagenome / Metatranscriptome | 126 | Y |
| F076119 | Metagenome / Metatranscriptome | 118 | N |
| F079711 | Metagenome / Metatranscriptome | 115 | N |
| F095596 | Metagenome | 105 | N |
| F097371 | Metagenome / Metatranscriptome | 104 | Y |
| F104970 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2207127508 | Not Available | 520 | Open in IMG/M |
| 2207128618 | Not Available | 519 | Open in IMG/M |
| 2207131197 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 516 | Open in IMG/M |
| 2207134937 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium | 511 | Open in IMG/M |
| 2207137046 | Not Available | 509 | Open in IMG/M |
| 2207137610 | Not Available | 508 | Open in IMG/M |
| 2207139749 | Not Available | 506 | Open in IMG/M |
| 2207140098 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 505 | Open in IMG/M |
| 2207141344 | Not Available | 504 | Open in IMG/M |
| 2207142887 | Not Available | 502 | Open in IMG/M |
| 2207144578 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 500 | Open in IMG/M |
| 2207154067 | Not Available | 580 | Open in IMG/M |
| 2207158528 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 575 | Open in IMG/M |
| 2207182968 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 559 | Open in IMG/M |
| 2207183787 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 556 | Open in IMG/M |
| 2207187112 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 546 | Open in IMG/M |
| 2207190714 | All Organisms → cellular organisms → Bacteria | 539 | Open in IMG/M |
| 2207191794 | Not Available | 537 | Open in IMG/M |
| 2207194180 | Not Available | 533 | Open in IMG/M |
| 2207194333 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 533 | Open in IMG/M |
| 2207197913 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 528 | Open in IMG/M |
| 2207198144 | Not Available | 527 | Open in IMG/M |
| 2207198996 | Not Available | 526 | Open in IMG/M |
| 2207199470 | Not Available | 526 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2207125930 | 2208979917 | F009329 | MTPYELRFEIFKQAYNMLNDEFCNKFDVAREWNEKVGKLEIELPEFPSLGEVLERAETINDFVSSK |
| 2207127508 | 2208982247 | F063841 | MAIYKEISSKVIIRKVMRDLKPNHANWIDDAVEWIGEALEH |
| 2207128618 | 2208983929 | F036971 | RTFYKNQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEMMDPTDIDKGIWSEFAEEEMFNNMDLTDEQESELDVLMNLEAESKRGK |
| 2207131197 | 2208987718 | F079711 | QLISAHHPNIAKTLQEDWDARQVRVVFNQVEQQEDLGFWLQVQALARDQLSCSLESWAQCPKDPSVSTALKFQTPLVQQGVSTQLLCSLQQLAKRIQNNWFGSTSKIGISTDHQDH |
| 2207134937 | 2208993159 | F004907 | LNDWPEEEGFGSSDRAEYIRRIVETIDSERKFLQAEQELVTINKLTECPKNDTVRAYMKMNEKLAEGMVQ |
| 2207137046 | 2208996133 | F058202 | MKSLRQIVELKKIDIVPDPELQAGQVSNYANPKSEAEKNFVGKHLDNVQQQLHPAFKNEAEQDAVFKGGSIKKDLTHDQAGAGHYKDGQDAEVYEQAINFVRENLTEDNLKAFDELAQNNPEAAVDFAMEIVSEVVEDE |
| 2207137610 | 2208996890 | F023998 | MSKVIRNNKHAKRSTKTSSTRAARQDPELAGDSTVIELMERSGDRDLMTTILILHEEWALNQGYRSKQQAPGIKRQAASLKHLPRYVASDYKATSIKRQALKEIPPN |
| 2207139749 | 2209000007 | F013470 | NGNETLWKKTIRQINDDLYKVYMSADVFTELEKELEIQDVAKYIKDGDVYAYDIIVKKNRLQEVLKRLEEFDC |
| 2207140098 | 2209000510 | F018167 | LEFERLHKTTIFAIQKAGELVEIAYDVYSKGQLKRVNLPGVDLIGVDGKTYESKVTQFANKSQRAVRGLILKNRRQAGVYKDKLADYFVITDVKKGKACCIPSSHLYNIRDNGACVTANADPAIEDFFLNSYEQENGKDYFAEAEDFDYSYVRSF**ITQEQTSSTHL |
| 2207141344 | 2209002332 | F003661 | MDPTTAALIAVLVAAGSEIIALLPIRENSWVQVIVKALKIVFPKR |
| 2207142887 | 2209004628 | F076119 | MSDINKRYLFGSAVLFLGIFVLEGALGLFGIEESILFLVYWVFYFVWLFKGKDYLKKRSI |
| 2207144578 | 2209007058 | F021645 | VKGIVTALQDVAAELKGIRNILASMWHSRYFDGDTDQVSPEVYADEYISTEECARRLGIT |
| 2207154067 | 2209020839 | F095596 | MKTDKYGIEIKVGDFVFLDSYTGMEYGTSAGTIQQIKKIGSKRISFDVGYKNLRSAQFYFITAYTLVGMQKKVFNDGTFYYPMFVRTATNDQMYNSIISELKKGSDDKLTEALIKNETYKYENQLGNYKLRNSAYGFSL |
| 2207158528 | 2209027206 | F025617 | MDRFLTYVSKYGGSPKPGILKSMPSLGGEYMNMYGLPSDRQYLIETKEGDLIGICSKTNKLCKFNVIDDTYVVQIPSIIKLKEALDNIPNVPLDPNFKIKSRFYR |
| 2207182968 | 2209054847 | F050774 | MKIDLKMLTPILITALIGVIGWLFNTIEELQIAHSSMMTQLRILEKDLDMQESLFSELLFKISG |
| 2207183787 | 2209056199 | F034342 | VKKPFKTPKNRALGASKESNFALGDIVSWKTWEISLENEIFETKEGLLIEIIEETRLENVVLIAKIMPFGASEYEFIPLFPSKKHKTGLFIACLARLRTQLTTI |
| 2207187112 | 2209061729 | F003154 | MDTLSLAMNIFNGTYKDERGWKHYRVQDKPYDIRMHPMTLEWECSCPAYKFKRGTKTCKHIKEIQSNPK |
| 2207190714 | 2209067547 | F066737 | MKWGEGWQAHIDEPTHKVPFDVSEFPVSFTTYDLDFVRRKHLGF |
| 2207191794 | 2209069287 | F028777 | MLGLFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICTLDKEFSASGNLRKVVHRLNNSYNLSIYKEECNCDNKQKANLN |
| 2207194180 | 2209073012 | F035970 | AEQLATDYGNEGWTGDCNDFTQASSSVSQELTNREVERLWDEFANQELLANGVIFTFTRKGRDKIINLSQADKN*PF |
| 2207194333 | 2209073244 | F032445 | NMDFKPFNKHLWIVPQEEQQDKEDPLFIMPDEYQPPKSPYVIGSIMDMADDCTIDLLPGDTIVVERSTIQEIKGDFETIYVVKENYVYGRINDETDK |
| 2207197913 | 2209078754 | F013703 | WLITGNYGKVIRNDINQVGLLSSSIGRISRENFLNLNLMYGYKYPIQFRDNTINLQTFVSYTIFRYYEGLKTENKYLLLESPILIYPGANIDINFTETFKMNFGFYIGYNTLVNDLGERNISYSLVFGTNF |
| 2207198144 | 2209079095 | F097371 | MAKTLRTSGDYTVKAGAGYDSGSGTNTIRLDARYVRIP |
| 2207198996 | 2209080366 | F007306 | MSWYIGTLEECNAYNAKVNEAKQYKGSITSNWANPKQHPDGSKWAIVAHSTEPDEESGLTLVDELTEDWTPIEAP |
| 2207199259 | 2209080794 | F104970 | MAQDELLSLFPTPVLIAQYPMPYDKELEFIRELPCRRENKGGDAGNVIHYNRQSEETFVLDKPELSNIRAFI |
| 2207199470 | 2209081101 | F064645 | VKGIVTALQDVAAELKGIRNILASMWHSRYFDGDTDQVSPEVYADEYISTEECARRLGITDQTVRNWILQGKKDPKYGWKQGLHYIVIPGKQRNTVRIPWNQLIVSFAKGKEVTL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |