Scaffold 2207134937

Overview

Basic Information

• Taxon OID: 2199352036
• Scaffold ID: 2207134937
• Source Dataset Name: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_sample_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Alabama State University
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 511
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa

Source Dataset Sampling Location

• Location Name: USA: Alabama
• Coordinates
  • Lat. (^o): 30.15
  • Long. (^o): -88.446

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004907	Metagenome / Metatranscriptome	419	Y

Sequences

Protein ID	Family	RBS	Sequence
2208993159	F004907	N/A	LNDWPEEEGFGSSDRAEYIRRIVETIDSERKFLQAEQELVTINKLTECPKNDTVRAYMKMNEKLAEGMVQ