Scaffold rumenmetagenome__Contig_4166

Overview

Basic Information

• Taxon OID: 2199352026
• Scaffold ID: rumenmetagenome__Contig_4166
• Source Dataset Name: Bovine rumen microbial communities from Vernon, TX, USA, Sample 669
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Texas A and M University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4078
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities From Vernon, Tx, Usa

Source Dataset Sampling Location

• Location Name: Vernon, Texas
• Coordinates
  • Lat. (^o): 34.154
  • Long. (^o): -99.264

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081939	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
rumenmetagenome_00057000	F081939	AGG	MLADKLNEAIESCNFEPTEELDLFAEAVALLIAYWGKVSDWTPIEKASYVGYVTTTVMEKGLDVAIKDFDEYRKSLNTKFGN