Scaffold deepsgr__Contig_42683

Overview

Basic Information

• Taxon OID: 2199352025
• Scaffold ID: deepsgr__Contig_42683
• Source Dataset Name: Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1620
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. FHR47 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location

• Location Name: United Kingdom Rothamsted
• Coordinates
  • Lat. (^o): 56.03
  • Long. (^o): -2.82

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018030	Metagenome / Metatranscriptome	237	N
F020741	Metagenome / Metatranscriptome	222	N
F058291	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
deepsgr_00385960	F018030	N/A	MDAATSLDDAVRKAQDIMWGALSPGSARAAAVVKLRDLLWSAKMTRALAISSDNCPAFALRQSRIALADASAWPDKTLSVLWTILDDPALNAALGIPQATDAARRNHPCP
deepsgr_00385970	F020741	GAG	MARCGSSFLGALLLVLIAQPATAQIGAFSQSPDREVGNNSRARGAQVECGPIGCRPLPPGCKQVRLGGRWLDNNGLRVVCDPKRN
deepsgr_00385980	F058291	AGGAG	MLKTSKFILPYEPGYTGHWEAEKRRKETREWLRQRERDIAAPSIVPETPEKDAALTSKRS